J4_9B00_023

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B00_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0545

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9B00|1|2A|G|1772
9B00|1|2A|A|1773
9B00|1|2A|C|1774
9B00|1|2A|U|1775
9B00|1|2A|G|1776
*
9B00|1|2A|C|1788
9B00|1|2A|A|1789
9B00|1|2A|C|1790
9B00|1|2A|A|1791
9B00|1|2A|G|1792
*
9B00|1|2A|C|1827
9B00|1|2A|G|1828
9B00|1|2A|A|1829
9B00|1|2A|C|1830
*
9B00|1|2A|G|1975
9B00|1|2A|U|1976
9B00|1|2A|A|1977
9B00|1|2A|A|1978
9B00|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA