J4_9B0G_005

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9B0G|1|L5|A|2366, 9B0G|1|L5|U|2369, 9B0G|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0G|1|L5|C|2365
9B0G|1|L5|A|2366
9B0G|1|L5|A|2367
9B0G|1|L5|A|2368
9B0G|1|L5|U|2369
9B0G|1|L5|A|2370
9B0G|1|L5|U|2371
*
9B0G|1|L5|A|2389
9B0G|1|L5|G|2390
9B0G|1|L5|G|2391
*
9B0G|1|L5|C|2824
9B0G|1|L5|A|2825
9B0G|1|L5|U|2826
9B0G|1|L5|G|2827
9B0G|1|L5|U|2828
9B0G|1|L5|U|2829
*
9B0G|1|L5|A|3856
9B0G|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31