J4_9B0P_003

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9B0P|1|L5|C|216, 9B0P|1|L5|C|217, 9B0P|1|L5|A|218, 9B0P|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|C|196
9B0P|1|L5|A|197
9B0P|1|L5|A|198
9B0P|1|L5|G|199
*
9B0P|1|L5|C|215
9B0P|1|L5|C|216
9B0P|1|L5|C|217
9B0P|1|L5|A|218
9B0P|1|L5|G|219
9B0P|1|L5|C|220
9B0P|1|L5|C|221
9B0P|1|L5|C|222
*
9B0P|1|L5|G|226
9B0P|1|L5|A|227
9B0P|1|L5|C|228
*
9B0P|1|L5|G|240
9B0P|1|L5|G|241
9B0P|1|L5|U|242
9B0P|1|L5|A|243
9B0P|1|L5|G|244

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26