J4_9B0Q_018

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9B0Q|1|l5|A|218, 9B0Q|1|l5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0Q|1|l5|C|196
9B0Q|1|l5|A|197
9B0Q|1|l5|A|198
9B0Q|1|l5|G|199
*
9B0Q|1|l5|C|215
9B0Q|1|l5|C|216
9B0Q|1|l5|C|217
9B0Q|1|l5|A|218
9B0Q|1|l5|G|219
9B0Q|1|l5|C|220
9B0Q|1|l5|C|221
9B0Q|1|l5|C|222
*
9B0Q|1|l5|G|226
9B0Q|1|l5|A|227
9B0Q|1|l5|C|228
*
9B0Q|1|l5|G|240
9B0Q|1|l5|G|241
9B0Q|1|l5|U|242
9B0Q|1|l5|A|243
9B0Q|1|l5|G|244

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lC

60S ribosomal protein L4

Chain lY

60S ribosomal protein L26