J4_9B0W_001
3D structure
- PDB id
- 9B0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF2-A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9B0W|1|AP|U|47, 9B0W|1|AP|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B0W_001 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2645
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9B0W|1|AP|G|7
9B0W|1|AP|U|8
9B0W|1|AP|A|9
9B0W|1|AP|G|10
*
9B0W|1|AP|C|25
9B0W|1|AP|G|26
9B0W|1|AP|U|27
*
9B0W|1|AP|A|43
9B0W|1|AP|A|44
9B0W|1|AP|G|45
9B0W|1|AP|G|46
9B0W|1|AP|U|47
9B0W|1|AP|C|48
9B0W|1|AP|C|49
*
9B0W|1|AP|G|65
9B0W|1|AP|C|66
Current chains
- Chain AP
- A/P site tRNA
Nearby chains
- Chain CB
- eEF2
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10-like
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: