J4_9B0W_009

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9B0W|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B0W_009 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1486

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9B0W|1|L5|C|3696
9B0W|1|L5|U|3697
9B0W|1|L5|G|3698
*
9B0W|1|L5|C|3752
9B0W|1|L5|G|3753
*
9B0W|1|L5|C|3771
9B0W|1|L5|U|3772
9B0W|1|L5|U|3773
9B0W|1|L5|A|3774
9B0W|1|L5|A|3775
9B0W|1|L5|G|3776
9B0W|1|L5|G|3777
9B0W|1|L5|U|3778
9B0W|1|L5|A|3779
9B0W|1|L5|G|3780
*
9B0W|1|L5|U|3814
9B0W|1|L5|G|3815
9B0W|1|L5|A|3816
9B0W|1|L5|A|3817
9B0W|1|L5|U|3818
9B0W|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA