J4_9B4Z_006

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(4SU)AG*CAC*GGG(7MG)UCG*CA

Length

16 nucleotides

Bulged bases

9B4Z|1|AY|4SU|8, 9B4Z|1|AY|U|47, 9B4Z|1|AY|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|AY|U|7
9B4Z|1|AY|4SU|8
9B4Z|1|AY|A|9
9B4Z|1|AY|G|10
*
9B4Z|1|AY|C|25
9B4Z|1|AY|A|26
9B4Z|1|AY|C|27
*
9B4Z|1|AY|G|43
9B4Z|1|AY|G|44
9B4Z|1|AY|G|45
9B4Z|1|AY|7MG|46
9B4Z|1|AY|U|47
9B4Z|1|AY|C|48
9B4Z|1|AY|G|49
*
9B4Z|1|AY|C|65
9B4Z|1|AY|A|66

Current chains

Chain AY

tRNA-Val

Nearby chains

Chain AG

30S ribosomal protein S7

Chain B1

50S ribosomal protein L33