J4_9B4Z_015

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9B4Z|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BA|C|1833
9B4Z|1|BA|U|1834
9B4Z|1|BA|G|1835
*
9B4Z|1|BA|C|1905
9B4Z|1|BA|G|1906
*
9B4Z|1|BA|C|1924
9B4Z|1|BA|C|1925
9B4Z|1|BA|U|1926
9B4Z|1|BA|A|1927
9B4Z|1|BA|A|1928
9B4Z|1|BA|G|1929
9B4Z|1|BA|G|1930
9B4Z|1|BA|U|1931
9B4Z|1|BA|A|1932
9B4Z|1|BA|G|1933
*
9B4Z|1|BA|C|1967
9B4Z|1|BA|G|1968
9B4Z|1|BA|A|1969
9B4Z|1|BA|A|1970
9B4Z|1|BA|U|1971
9B4Z|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2