J4_9B51_015

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9B51|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B51_015 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.0449

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9B51|1|BA|C|1833
9B51|1|BA|U|1834
9B51|1|BA|G|1835
*
9B51|1|BA|C|1905
9B51|1|BA|G|1906
*
9B51|1|BA|C|1924
9B51|1|BA|C|1925
9B51|1|BA|U|1926
9B51|1|BA|A|1927
9B51|1|BA|A|1928
9B51|1|BA|G|1929
9B51|1|BA|G|1930
9B51|1|BA|U|1931
9B51|1|BA|A|1932
9B51|1|BA|G|1933
*
9B51|1|BA|C|1967
9B51|1|BA|G|1968
9B51|1|BA|A|1969
9B51|1|BA|A|1970
9B51|1|BA|U|1971
9B51|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2