J4_9BDL_005

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG

Length

30 nucleotides

Bulged bases

9BDL|1|A28S|G|959, 9BDL|1|A28S|C|972, 9BDL|1|A28S|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|712
9BDL|1|A28S|C|713
*
9BDL|1|A28S|G|955
9BDL|1|A28S|A|956
9BDL|1|A28S|G|957
9BDL|1|A28S|G|958
9BDL|1|A28S|G|959
9BDL|1|A28S|A|960
9BDL|1|A28S|G|961
*
9BDL|1|A28S|U|971
9BDL|1|A28S|G|971|||A
9BDL|1|A28S|C|972
9BDL|1|A28S|G|973
9BDL|1|A28S|C|974
9BDL|1|A28S|C|975
9BDL|1|A28S|G|976
9BDL|1|A28S|C|977
9BDL|1|A28S|G|978
9BDL|1|A28S|C|979
9BDL|1|A28S|U|980
*
9BDL|1|A28S|G|1275
9BDL|1|A28S|C|1276
9BDL|1|A28S|G|1277
9BDL|1|A28S|C|1278
9BDL|1|A28S|A|1279
9BDL|1|A28S|C|1280
9BDL|1|A28S|G|1281
9BDL|1|A28S|G|1282
9BDL|1|A28S|G|1283
9BDL|1|A28S|G|1284

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7

Chain AL32

Large ribosomal subunit protein eL32