J4_9BDL_010
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9BDL|1|A28S|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDL_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.101
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDL|1|A28S|C|3696
9BDL|1|A28S|U|3697
9BDL|1|A28S|G|3698
*
9BDL|1|A28S|C|3752
9BDL|1|A28S|G|3753
*
9BDL|1|A28S|C|3771
9BDL|1|A28S|U|3772
9BDL|1|A28S|U|3773
9BDL|1|A28S|A|3774
9BDL|1|A28S|A|3775
9BDL|1|A28S|G|3776
9BDL|1|A28S|G|3777
9BDL|1|A28S|U|3778
9BDL|1|A28S|A|3779
9BDL|1|A28S|G|3780
*
9BDL|1|A28S|U|3814
9BDL|1|A28S|G|3815
9BDL|1|A28S|A|3816
9BDL|1|A28S|A|3817
9BDL|1|A28S|U|3818
9BDL|1|A28S|G|3819
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL02
- 60S ribosomal protein L8
- Chain AL41
- eL41
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: