J4_9BDN_004

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9BDN|1|A28S|C|216, 9BDN|1|A28S|C|217, 9BDN|1|A28S|A|218, 9BDN|1|A28S|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|196
9BDN|1|A28S|A|197
9BDN|1|A28S|A|198
9BDN|1|A28S|G|199
*
9BDN|1|A28S|C|215
9BDN|1|A28S|C|216
9BDN|1|A28S|C|217
9BDN|1|A28S|A|218
9BDN|1|A28S|G|219
9BDN|1|A28S|C|220
9BDN|1|A28S|C|221
9BDN|1|A28S|C|222
*
9BDN|1|A28S|G|226
9BDN|1|A28S|A|227
9BDN|1|A28S|C|228
*
9BDN|1|A28S|G|240
9BDN|1|A28S|G|241
9BDN|1|A28S|U|242
9BDN|1|A28S|A|243
9BDN|1|A28S|G|244

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26