J4_9BDN_007

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

9BDN|1|A28S|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|A|2551
9BDN|1|A28S|G|2552
9BDN|1|A28S|A|2553
9BDN|1|A28S|U|2554
9BDN|1|A28S|G|2555
*
9BDN|1|A28S|C|2572
9BDN|1|A28S|A|2573
9BDN|1|A28S|G|2574
9BDN|1|A28S|U|2575
9BDN|1|A28S|G|2576
*
9BDN|1|A28S|C|2585
9BDN|1|A28S|G|2586
9BDN|1|A28S|A|2587
9BDN|1|A28S|C|2588
9BDN|1|A28S|C|2589
*
9BDN|1|A28S|G|2756
9BDN|1|A28S|A|2757
9BDN|1|A28S|G|2758
9BDN|1|A28S|G|2759
9BDN|1|A28S|G|2760
9BDN|1|A28S|U|2761
9BDN|1|A28S|G|2762
9BDN|1|A28S|U|2763
9BDN|1|A28S|A|2764
9BDN|1|A28S|A|2765
9BDN|1|A28S|A|2766
9BDN|1|A28S|U|2767

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34