J4_9BDN_008

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9BDN|1|A28S|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|G|2618
9BDN|1|A28S|G|2619
*
9BDN|1|A28S|U|2637
9BDN|1|A28S|G|2638
9BDN|1|A28S|U|2639
9BDN|1|A28S|G|2640
9BDN|1|A28S|A|2641
9BDN|1|A28S|A|2642
*
9BDN|1|A28S|U|2692
9BDN|1|A28S|G|2693
9BDN|1|A28S|G|2694
9BDN|1|A28S|A|2695
9BDN|1|A28S|A|2696
9BDN|1|A28S|A|2697
9BDN|1|A28S|G|2698
*
9BDN|1|A28S|U|2718
9BDN|1|A28S|C|2719

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

Large ribosomal subunit protein eL22

Chain AL34

60S ribosomal protein L34

Chain AL38

Large ribosomal subunit protein eL38