J4_9BDN_013

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGG*CGUC*GAAGGUCG*CC

Length

18 nucleotides

Bulged bases

9BDN|1|ETRN|U|47, 9BDN|1|ETRN|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BDN_013 not in the Motif Atlas

Homologous match to J4_7E8O_001

Geometric discrepancy: 0.3034

The information below is about J4_7E8O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|ETRN|G|7
9BDN|1|ETRN|U|8
9BDN|1|ETRN|G|9
9BDN|1|ETRN|G|10
*
9BDN|1|ETRN|C|25
9BDN|1|ETRN|G|26
9BDN|1|ETRN|U|27
9BDN|1|ETRN|C|28
*
9BDN|1|ETRN|G|42
9BDN|1|ETRN|A|43
9BDN|1|ETRN|A|44
9BDN|1|ETRN|G|45
9BDN|1|ETRN|G|46
9BDN|1|ETRN|U|47
9BDN|1|ETRN|C|48
9BDN|1|ETRN|G|49
*
9BDN|1|ETRN|C|65
9BDN|1|ETRN|C|66

Current chains

Chain ETRN

tRNAfMet

Nearby chains

Chain AL42

eL42

Chain AS05

Ribosomal protein S5