J4_9BDP_001
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9BDP|1|A18S|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDP_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1936
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BDP|1|A18S|C|98
9BDP|1|A18S|A|99
9BDP|1|A18S|U|100
9BDP|1|A18S|U|101
9BDP|1|A18S|A|102
9BDP|1|A18S|A|103
9BDP|1|A18S|A|104
9BDP|1|A18S|U|105
9BDP|1|A18S|C|106
*
9BDP|1|A18S|G|355
9BDP|1|A18S|C|356
9BDP|1|A18S|C|357
*
9BDP|1|A18S|G|405
9BDP|1|A18S|U|406
9BDP|1|A18S|G|407
9BDP|1|A18S|A|408
9BDP|1|A18S|C|409
*
9BDP|1|A18S|G|431
9BDP|1|A18S|G|432
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS08
- 40S ribosomal protein S8
- Chain AS11
- 40S ribosomal protein S11
- Chain AS23
- 40S ribosomal protein S23
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