J4_9BDP_002
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 9BDP|1|A18S|A|668, 9BDP|1|A18S|A|672, 9BDP|1|A18S|A|1083, 9BDP|1|A18S|C|1085, 9BDP|1|A18S|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDP|1|A18S|G|665
9BDP|1|A18S|U|666
9BDP|1|A18S|U|667
9BDP|1|A18S|A|668
9BDP|1|A18S|A|669
9BDP|1|A18S|A|670
9BDP|1|A18S|A|671
9BDP|1|A18S|A|672
9BDP|1|A18S|G|673
*
9BDP|1|A18S|C|1032
9BDP|1|A18S|G|1033
9BDP|1|A18S|A|1034
9BDP|1|A18S|A|1035
9BDP|1|A18S|A|1036
9BDP|1|A18S|G|1037
*
9BDP|1|A18S|C|1078
9BDP|1|A18S|C|1079
9BDP|1|A18S|A|1080
9BDP|1|A18S|U|1081
9BDP|1|A18S|A|1082
9BDP|1|A18S|A|1083
9BDP|1|A18S|A|1084
9BDP|1|A18S|C|1085
9BDP|1|A18S|G|1086
9BDP|1|A18S|A|1087
9BDP|1|A18S|U|1088
9BDP|1|A18S|G|1089
*
9BDP|1|A18S|U|1160
9BDP|1|A18S|U|1161
9BDP|1|A18S|C|1162
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS26
- eS26
Coloring options: