J4_9BDP_004

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9BDP|1|A28S|C|216, 9BDP|1|A28S|C|217, 9BDP|1|A28S|A|218, 9BDP|1|A28S|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A28S|C|196
9BDP|1|A28S|A|197
9BDP|1|A28S|A|198
9BDP|1|A28S|G|199
*
9BDP|1|A28S|C|215
9BDP|1|A28S|C|216
9BDP|1|A28S|C|217
9BDP|1|A28S|A|218
9BDP|1|A28S|G|219
9BDP|1|A28S|C|220
9BDP|1|A28S|C|221
9BDP|1|A28S|C|222
*
9BDP|1|A28S|G|226
9BDP|1|A28S|A|227
9BDP|1|A28S|C|228
*
9BDP|1|A28S|G|240
9BDP|1|A28S|G|241
9BDP|1|A28S|U|242
9BDP|1|A28S|A|243
9BDP|1|A28S|G|244

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26