J4_9BDP_008

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUG*CAAAGC*GUGAUU*AUGAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A28S|G|3634
9BDP|1|A28S|A|3635
9BDP|1|A28S|C|3636
9BDP|1|A28S|U|3637
9BDP|1|A28S|G|3638
*
9BDP|1|A28S|C|3650
9BDP|1|A28S|A|3651
9BDP|1|A28S|A|3652
9BDP|1|A28S|A|3653
9BDP|1|A28S|G|3654
9BDP|1|A28S|C|3655
*
9BDP|1|A28S|G|3689
9BDP|1|A28S|U|3690
9BDP|1|A28S|G|3691
9BDP|1|A28S|A|3692
9BDP|1|A28S|U|3693
9BDP|1|A28S|U|3694
*
9BDP|1|A28S|A|3821
9BDP|1|A28S|U|3822
9BDP|1|A28S|G|3823
9BDP|1|A28S|A|3824
9BDP|1|A28S|A|3825
9BDP|1|A28S|C|3826

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

60S ribosomal protein L8

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a