J4_9BDP_013
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9BDP|1|PTRN|U|8, 9BDP|1|PTRN|U|47, 9BDP|1|PTRN|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDP_013 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.245
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9BDP|1|PTRN|G|7
9BDP|1|PTRN|U|8
9BDP|1|PTRN|G|9
9BDP|1|PTRN|G|10
*
9BDP|1|PTRN|C|25
9BDP|1|PTRN|G|26
9BDP|1|PTRN|U|27
*
9BDP|1|PTRN|A|43
9BDP|1|PTRN|A|44
9BDP|1|PTRN|G|45
9BDP|1|PTRN|G|46
9BDP|1|PTRN|U|47
9BDP|1|PTRN|C|48
9BDP|1|PTRN|G|49
*
9BDP|1|PTRN|C|65
9BDP|1|PTRN|C|66
Current chains
- Chain PTRN
- tRNAfMet
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL10
- Ribosomal protein L10
- Chain ANG
- Angiogenin
Coloring options: