J4_9BDP_017

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9BDP|1|ETRN|U|8, 9BDP|1|ETRN|U|47, 9BDP|1|ETRN|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BDP_017 not in the Motif Atlas

Homologous match to J4_6UFH_001

Geometric discrepancy: 0.2355

The information below is about J4_6UFH_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

9BDP|1|ETRN|G|7
9BDP|1|ETRN|U|8
9BDP|1|ETRN|G|9
9BDP|1|ETRN|G|10
*
9BDP|1|ETRN|C|25
9BDP|1|ETRN|G|26
9BDP|1|ETRN|U|27
*
9BDP|1|ETRN|A|43
9BDP|1|ETRN|A|44
9BDP|1|ETRN|G|45
9BDP|1|ETRN|G|46
9BDP|1|ETRN|U|47
9BDP|1|ETRN|C|48
9BDP|1|ETRN|G|49
*
9BDP|1|ETRN|C|65
9BDP|1|ETRN|C|66

Current chains

Chain ETRN

tRNAfMet

Nearby chains

Chain AL42

eL42