J4_9BS0_002

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BS0_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1317

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9BS0|1|A|U|340
9BS0|1|A|G|341
9BS0|1|A|A|342
9BS0|1|A|A|343
9BS0|1|A|G|344
*
9BS0|1|A|C|360
9BS0|1|A|G|361
9BS0|1|A|C|362
9BS0|1|A|C|363
*
9BS0|1|A|G|367
9BS0|1|A|G|368
9BS0|1|A|A|369
*
9BS0|1|A|U|381
9BS0|1|A|G|382
9BS0|1|A|U|383
9BS0|1|A|A|384
9BS0|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain P

Large ribosomal subunit protein uL24