J4_9BS0_003
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CGCAG*CGAG*CGCAUGAG
- Length
- 21 nucleotides
- Bulged bases
- 9BS0|1|A|G|701
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BS0_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4417
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BS0|1|A|C|645
9BS0|1|A|A|646
9BS0|1|A|A|647
9BS0|1|A|G|648
*
9BS0|1|A|C|670
9BS0|1|A|G|671
9BS0|1|A|C|672
9BS0|1|A|A|673
9BS0|1|A|G|674
*
9BS0|1|A|C|681
9BS0|1|A|G|682
9BS0|1|A|A|683
9BS0|1|A|G|684
*
9BS0|1|A|C|696
9BS0|1|A|G|697
9BS0|1|A|C|698
9BS0|1|A|A|699
9BS0|1|A|U|700
9BS0|1|A|G|701
9BS0|1|A|A|702
9BS0|1|A|G|703
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain I
- Large ribosomal subunit protein uL15
Coloring options: