J4_9BSS_003
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 9BSS|1|A|G|1311, 9BSS|1|A|A|1312, 9BSS|1|A|A|1314, 9BSS|1|A|U|1692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BSS_003 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1691
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9BSS|1|A|C|1310
9BSS|1|A|G|1311
9BSS|1|A|A|1312
9BSS|1|A|A|1313
9BSS|1|A|A|1314
9BSS|1|A|G|1315
*
9BSS|1|A|C|1333
9BSS|1|A|C|1334
*
9BSS|1|A|G|1690
9BSS|1|A|A|1691
9BSS|1|A|U|1692
9BSS|1|A|C|1693
*
9BSS|1|A|G|2038
9BSS|1|A|G|2039
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein bL17
- Chain N
- Large ribosomal subunit protein uL22
- Chain T
- Large ribosomal subunit protein bL32
Coloring options: