J4_9CG6_006

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG6_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0544

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9CG6|1|a|G|297
9CG6|1|a|G|298
9CG6|1|a|A|299
9CG6|1|a|A|300
9CG6|1|a|G|301
*
9CG6|1|a|C|316
9CG6|1|a|G|317
9CG6|1|a|C|318
9CG6|1|a|G|319
*
9CG6|1|a|C|323
9CG6|1|a|A|324
9CG6|1|a|G|325
*
9CG6|1|a|C|337
9CG6|1|a|G|338
9CG6|1|a|U|339
9CG6|1|a|A|340
9CG6|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24