J4_9CN3_004

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9CN3|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CN3_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1583

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9CN3|1|A|C|2544
9CN3|1|A|U|2545
9CN3|1|A|G|2546
*
9CN3|1|A|C|2569
9CN3|1|A|C|2570
*
9CN3|1|A|G|2587
9CN3|1|A|C|2588
9CN3|1|A|A|2589
9CN3|1|A|A|2590
9CN3|1|A|A|2591
9CN3|1|A|G|2592
9CN3|1|A|G|2593
9CN3|1|A|U|2594
9CN3|1|A|A|2595
9CN3|1|A|G|2596
*
9CN3|1|A|U|2630
9CN3|1|A|G|2631
9CN3|1|A|A|2632
9CN3|1|A|A|2633
9CN3|1|A|U|2634
9CN3|1|A|G|2635

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial