J4_9D0G_030

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

9D0G|1|2w|4SU|8, 9D0G|1|2w|U|47, 9D0G|1|2w|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0G|1|2w|A|7
9D0G|1|2w|4SU|8
9D0G|1|2w|A|9
9D0G|1|2w|G|10
*
9D0G|1|2w|C|25
9D0G|1|2w|A|26
9D0G|1|2w|G|27
*
9D0G|1|2w|C|43
9D0G|1|2w|G|44
9D0G|1|2w|U|45
9D0G|1|2w|G7M|46
9D0G|1|2w|U|47
9D0G|1|2w|C|48
9D0G|1|2w|C|49
*
9D0G|1|2w|G|65
9D0G|1|2w|U|66

Current chains

Chain 2w

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA