J4_9D0H_018

3D structure

PDB id

9D0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0H|1|2A|C|297
9D0H|1|2A|G|298
9D0H|1|2A|A|299
9D0H|1|2A|A|300
9D0H|1|2A|G|301
*
9D0H|1|2A|C|316
9D0H|1|2A|G|317
9D0H|1|2A|C|318
9D0H|1|2A|C|319
*
9D0H|1|2A|G|323
9D0H|1|2A|A|324
9D0H|1|2A|G|325
*
9D0H|1|2A|C|337
9D0H|1|2A|G|338
9D0H|1|2A|U|339
9D0H|1|2A|A|340
9D0H|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24