J4_9D0I_002

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D0I_002 not in the Motif Atlas

Homologous match to J4_8B0X_005

Geometric discrepancy: 0.0739

The information below is about J4_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9D0I|1|1A|C|297
9D0I|1|1A|G|298
9D0I|1|1A|A|299
9D0I|1|1A|A|300
9D0I|1|1A|G|301
*
9D0I|1|1A|C|316
9D0I|1|1A|G|317
9D0I|1|1A|C|318
9D0I|1|1A|C|319
*
9D0I|1|1A|G|323
9D0I|1|1A|A|324
9D0I|1|1A|G|325
*
9D0I|1|1A|C|337
9D0I|1|1A|G|338
9D0I|1|1A|U|339
9D0I|1|1A|A|340
9D0I|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24