J4_9D0I_017

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9D0I|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2A|C|268
9D0I|1|2A|U|269
*
9D0I|1|2A|G|370
9D0I|1|2A|A|371
9D0I|1|2A|G|372
9D0I|1|2A|U|373
9D0I|1|2A|A|374
9D0I|1|2A|C|375
*
9D0I|1|2A|G|399
9D0I|1|2A|G|400
9D0I|1|2A|A|401
9D0I|1|2A|A|402
9D0I|1|2A|U|403
9D0I|1|2A|C|404
9D0I|1|2A|U|405
9D0I|1|2A|G|406
*
9D0I|1|2A|U|421
9D0I|1|2A|A|422
9D0I|1|2A|A|423
9D0I|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9