J4_9D0I_023

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2A|G|1772
9D0I|1|2A|A|1773
9D0I|1|2A|C|1774
9D0I|1|2A|U|1775
9D0I|1|2A|G|1776
*
9D0I|1|2A|C|1788
9D0I|1|2A|A|1789
9D0I|1|2A|C|1790
9D0I|1|2A|A|1791
9D0I|1|2A|G|1792
*
9D0I|1|2A|C|1827
9D0I|1|2A|G|1828
9D0I|1|2A|A|1829
9D0I|1|2A|C|1830
*
9D0I|1|2A|G|1975
9D0I|1|2A|U|1976
9D0I|1|2A|A|1977
9D0I|1|2A|A|1978
9D0I|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA