J4_9D0I_025

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9D0I|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2A|C|2285
9D0I|1|2A|A|2286
9D0I|1|2A|A|2287
9D0I|1|2A|A|2288
9D0I|1|2A|G|2289
*
9D0I|1|2A|C|2343
9D0I|1|2A|U|2344
9D0I|1|2A|G|2345
9D0I|1|2A|A|2346
9D0I|1|2A|C|2347
*
9D0I|1|2A|G|2370
9D0I|1|2A|G|2371
9D0I|1|2A|G|2372
*
9D0I|1|2A|C|2381
9D0I|1|2A|G|2382
9D0I|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18