J4_9D0I_028

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

9D0I|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2a|G|142
9D0I|1|2a|A|143
9D0I|1|2a|G|144
*
9D0I|1|2a|C|178
9D0I|1|2a|A|179
9D0I|1|2a|U|180
9D0I|1|2a|G|181
9D0I|1|2a|U|182
9D0I|1|2a|G|183
*
9D0I|1|2a|C|194
9D0I|1|2a|A|195
9D0I|1|2a|A|196
9D0I|1|2a|A|197
9D0I|1|2a|G|198
*
9D0I|1|2a|C|219
9D0I|1|2a|G|220
9D0I|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20