J4_9D0J_002

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D0J_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0494

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9D0J|1|1A|C|297
9D0J|1|1A|G|298
9D0J|1|1A|A|299
9D0J|1|1A|A|300
9D0J|1|1A|G|301
*
9D0J|1|1A|C|316
9D0J|1|1A|G|317
9D0J|1|1A|C|318
9D0J|1|1A|C|319
*
9D0J|1|1A|G|323
9D0J|1|1A|A|324
9D0J|1|1A|G|325
*
9D0J|1|1A|C|337
9D0J|1|1A|G|338
9D0J|1|1A|U|339
9D0J|1|1A|A|340
9D0J|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24