J4_9D0J_024

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

9D0J|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D0J_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.058

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9D0J|1|2A|U|1833
9D0J|1|2A|U|1834
9D0J|1|2A|G|1835
*
9D0J|1|2A|C|1905
9D0J|1|2A|G|1906
*
9D0J|1|2A|C|1924
9D0J|1|2A|C|1925
9D0J|1|2A|U|1926
9D0J|1|2A|A|1927
9D0J|1|2A|A|1928
9D0J|1|2A|G|1929
9D0J|1|2A|G|1930
9D0J|1|2A|U|1931
9D0J|1|2A|A|1932
9D0J|1|2A|G|1933
*
9D0J|1|2A|C|1967
9D0J|1|2A|G|1968
9D0J|1|2A|A|1969
9D0J|1|2A|A|1970
9D0J|1|2A|A|1971
9D0J|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA