3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
9DFC|1|1A|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9DFC_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0679
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

9DFC|1|1A|U|1833
9DFC|1|1A|U|1834
9DFC|1|1A|G|1835
*
9DFC|1|1A|C|1905
9DFC|1|1A|G|1906
*
9DFC|1|1A|C|1924
9DFC|1|1A|C|1925
9DFC|1|1A|U|1926
9DFC|1|1A|A|1927
9DFC|1|1A|A|1928
9DFC|1|1A|G|1929
9DFC|1|1A|G|1930
9DFC|1|1A|U|1931
9DFC|1|1A|A|1932
9DFC|1|1A|G|1933
*
9DFC|1|1A|C|1967
9DFC|1|1A|G|1968
9DFC|1|1A|A|1969
9DFC|1|1A|A|1970
9DFC|1|1A|A|1971
9DFC|1|1A|A|1972

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1a
Small subunit ribosomal RNA; SSU rRNA
Chain 1x
Transfer RNA; tRNA

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