J4_9DFC_008
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9DFC|1|1A|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9DFC_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0679
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9DFC|1|1A|U|1833
9DFC|1|1A|U|1834
9DFC|1|1A|G|1835
*
9DFC|1|1A|C|1905
9DFC|1|1A|G|1906
*
9DFC|1|1A|C|1924
9DFC|1|1A|C|1925
9DFC|1|1A|U|1926
9DFC|1|1A|A|1927
9DFC|1|1A|A|1928
9DFC|1|1A|G|1929
9DFC|1|1A|G|1930
9DFC|1|1A|U|1931
9DFC|1|1A|A|1932
9DFC|1|1A|G|1933
*
9DFC|1|1A|C|1967
9DFC|1|1A|G|1968
9DFC|1|1A|A|1969
9DFC|1|1A|A|1970
9DFC|1|1A|A|1971
9DFC|1|1A|A|1972
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
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