J4_9DFD_012

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAGG*CCGC

Length

19 nucleotides

Bulged bases

9DFD|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1a|G|142
9DFD|1|1a|A|143
9DFD|1|1a|G|144
*
9DFD|1|1a|C|178
9DFD|1|1a|A|179
9DFD|1|1a|U|180
9DFD|1|1a|G|181
9DFD|1|1a|U|182
9DFD|1|1a|G|183
*
9DFD|1|1a|C|194
9DFD|1|1a|A|195
9DFD|1|1a|A|196
9DFD|1|1a|A|197
9DFD|1|1a|G|198
9DFD|1|1a|G|199
*
9DFD|1|1a|C|218
9DFD|1|1a|C|219
9DFD|1|1a|G|220
9DFD|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20