J4_9E9O_001

3D structure

PDB id

9E9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 SL5 crystal structure Cesium derivative

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

UC*GC*GA*UA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9E9O_001 not in the Motif Atlas

Homologous match to J4_9E9Q_001

Geometric discrepancy: 0.0528

The information below is about J4_9E9Q_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_86610.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9E9O|1|A|U|12
9E9O|1|A|C|13
*
9E9O|1|A|G|55
9E9O|1|A|C|56
*
9E9O|1|A|G|80
9E9O|1|A|A|81
*
9E9O|1|A|U|90
9E9O|1|A|A|91

Current chains

Chain A

RNA (101-MER)

Nearby chains