J4_9EBB_007

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9EBB|1|I|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9EBB_007 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.0913

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9EBB|1|I|C|2067
9EBB|1|I|U|2068
9EBB|1|I|G|2069
*
9EBB|1|I|C|2143
9EBB|1|I|G|2144
*
9EBB|1|I|C|2162
9EBB|1|I|C|2163
9EBB|1|I|U|2164
9EBB|1|I|A|2165
9EBB|1|I|A|2166
9EBB|1|I|G|2167
9EBB|1|I|G|2168
9EBB|1|I|U|2169
9EBB|1|I|A|2170
9EBB|1|I|G|2171
*
9EBB|1|I|C|2205
9EBB|1|I|G|2206
9EBB|1|I|A|2207
9EBB|1|I|A|2208
9EBB|1|I|U|2209
9EBB|1|I|G|2210

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterized function (DUF1713)