J4_9EC3_005

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GCGACUG*CACAG*UGAC*GUAACGAC

Length

24 nucleotides

Bulged bases

9EC3|1|I|A|2219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|I|G|2004
9EC3|1|I|C|2005
9EC3|1|I|G|2006
9EC3|1|I|A|2007
9EC3|1|I|C|2008
9EC3|1|I|U|2009
9EC3|1|I|G|2010
*
9EC3|1|I|C|2022
9EC3|1|I|A|2023
9EC3|1|I|C|2024
9EC3|1|I|A|2025
9EC3|1|I|G|2026
*
9EC3|1|I|U|2061
9EC3|1|I|G|2062
9EC3|1|I|A|2063
9EC3|1|I|C|2064
*
9EC3|1|I|G|2213
9EC3|1|I|U|2214
9EC3|1|I|A|2215
9EC3|1|I|A|2216
9EC3|1|I|C|2217
9EC3|1|I|G|2218
9EC3|1|I|A|2219
9EC3|1|I|C|2220

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain x

Mitochondrial domain of uncharacterized function (DUF1713)