J4_9EC3_006
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9EC3|1|I|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EC3_006 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.1144
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9EC3|1|I|C|2067
9EC3|1|I|U|2068
9EC3|1|I|G|2069
*
9EC3|1|I|C|2143
9EC3|1|I|G|2144
*
9EC3|1|I|C|2162
9EC3|1|I|C|2163
9EC3|1|I|U|2164
9EC3|1|I|A|2165
9EC3|1|I|A|2166
9EC3|1|I|G|2167
9EC3|1|I|G|2168
9EC3|1|I|U|2169
9EC3|1|I|A|2170
9EC3|1|I|G|2171
*
9EC3|1|I|C|2205
9EC3|1|I|G|2206
9EC3|1|I|A|2207
9EC3|1|I|A|2208
9EC3|1|I|U|2209
9EC3|1|I|G|2210
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- Transfer RNA; tRNA
- Chain x
- Mitochondrial domain of uncharacterized function (DUF1713)
Coloring options: