J4_9EC3_010

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUUCG*CGGAUAGGAC*GUGGAAAG*CGG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|a|C|138
9EC3|1|a|U|139
9EC3|1|a|U|140
9EC3|1|a|C|141
9EC3|1|a|G|142
*
9EC3|1|a|C|172
9EC3|1|a|G|173
9EC3|1|a|G|174
9EC3|1|a|A|175
9EC3|1|a|U|176
9EC3|1|a|A|177
9EC3|1|a|G|178
9EC3|1|a|G|179
9EC3|1|a|A|180
9EC3|1|a|C|181
*
9EC3|1|a|G|202
9EC3|1|a|U|203
9EC3|1|a|G|204
9EC3|1|a|G|205
9EC3|1|a|A|206
9EC3|1|a|A|207
9EC3|1|a|A|208
9EC3|1|a|G|209
*
9EC3|1|a|C|218
9EC3|1|a|G|219
9EC3|1|a|G|220

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20