J4_9EHO_002
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 9EHO|1|5|C|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EHO_002 not in the Motif Atlas
- Homologous match to J4_8GLP_001
- Geometric discrepancy: 0.1718
- The information below is about J4_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|C|111
9EHO|1|5|C|112
*
9EHO|1|5|G|285
9EHO|1|5|A|286
9EHO|1|5|G|287
9EHO|1|5|U|288
9EHO|1|5|C|289
9EHO|1|5|G|290
*
9EHO|1|5|C|311
9EHO|1|5|A|312
9EHO|1|5|A|313
9EHO|1|5|A|314
9EHO|1|5|G|315
9EHO|1|5|C|316
9EHO|1|5|G|317
*
9EHO|1|5|C|334
9EHO|1|5|A|335
9EHO|1|5|A|336
9EHO|1|5|G|337
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- Large ribosomal subunit protein eL36
Coloring options: