J4_9EHO_007
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAACG
- Length
- 21 nucleotides
- Bulged bases
- 9EHO|1|5|C|3629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EHO_007 not in the Motif Atlas
- Homologous match to J4_9H3G_008
- Geometric discrepancy: 0.1221
- The information below is about J4_9H3G_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|C|3507
9EHO|1|5|U|3508
9EHO|1|5|G|3509
*
9EHO|1|5|C|3563
9EHO|1|5|G|3564
*
9EHO|1|5|C|3582
9EHO|1|5|U|3583
9EHO|1|5|U|3584
9EHO|1|5|A|3585
9EHO|1|5|A|3586
9EHO|1|5|G|3587
9EHO|1|5|G|3588
9EHO|1|5|U|3589
9EHO|1|5|A|3590
9EHO|1|5|G|3591
*
9EHO|1|5|U|3625
9EHO|1|5|G|3626
9EHO|1|5|A|3627
9EHO|1|5|A|3628
9EHO|1|5|C|3629
9EHO|1|5|G|3630
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Large ribosomal subunit protein uL2
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eS32
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