J4_9EHO_008

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*UCG*CC*GUG

Length

13 nucleotides

Bulged bases

9EHO|1|5|A|4190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|C|4187
9EHO|1|5|C|4188
9EHO|1|5|A|4189
9EHO|1|5|A|4190
9EHO|1|5|G|4191
*
9EHO|1|5|U|4245
9EHO|1|5|C|4246
9EHO|1|5|G|4247
*
9EHO|1|5|C|4274
9EHO|1|5|C|4275
*
9EHO|1|5|G|4284
9EHO|1|5|U|4285
9EHO|1|5|G|4286

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein

Chain T

60S ribosomal protein L21

Chain o

Large ribosomal subunit protein eL42