J4_9F1B_005

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

9F1B|1|B5|G|859, 9F1B|1|B5|U|873, 9F1B|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1B|1|B5|C|706
9F1B|1|B5|C|707
*
9F1B|1|B5|G|855
9F1B|1|B5|A|856
9F1B|1|B5|G|857
9F1B|1|B5|G|858
9F1B|1|B5|G|859
9F1B|1|B5|A|860
9F1B|1|B5|G|861
*
9F1B|1|B5|U|871
9F1B|1|B5|G|872
9F1B|1|B5|U|873
9F1B|1|B5|C|874
9F1B|1|B5|G|875
9F1B|1|B5|C|876
9F1B|1|B5|C|877
9F1B|1|B5|G|878
*
9F1B|1|B5|C|1222
9F1B|1|B5|A|1223
9F1B|1|B5|C|1224
9F1B|1|B5|G|1225
9F1B|1|B5|G|1226
9F1B|1|B5|G|1227
9F1B|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32