3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
UC*GGUCAG*UC*GGCCGUA
Length
17 nucleotides
Bulged bases
9F1B|1|B5|C|2280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9F1B|1|B5|U|2252
9F1B|1|B5|C|2253
*
9F1B|1|B5|G|2277
9F1B|1|B5|G|2278
9F1B|1|B5|U|2279
9F1B|1|B5|C|2280
9F1B|1|B5|A|2281
9F1B|1|B5|G|2282
*
9F1B|1|B5|U|2381
9F1B|1|B5|C|2382
*
9F1B|1|B5|G|2620
9F1B|1|B5|G|2621
9F1B|1|B5|C|2622
9F1B|1|B5|C|2623
9F1B|1|B5|G|2624
9F1B|1|B5|U|2625
9F1B|1|B5|A|2626

Current chains

Chain B5
28S rRNA

Nearby chains

Chain B8
5.8S ribosomal RNA; 5.8S rRNA
Chain BR
Ribosomal protein L19
Chain BX
Large ribosomal subunit protein uL23
Chain Bg
Large ribosomal subunit protein eL34
Chain Bk
60S ribosomal protein L38
Chain Bl
60S ribosomal protein L39-like

Coloring options:

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