J4_9F1C_004

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9F1C|1|B5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1C|1|B5|C|196
9F1C|1|B5|A|197
9F1C|1|B5|A|198
9F1C|1|B5|G|199
*
9F1C|1|B5|C|215
9F1C|1|B5|C|216
9F1C|1|B5|C|217
9F1C|1|B5|A|218
9F1C|1|B5|G|219
9F1C|1|B5|C|220
9F1C|1|B5|C|221
9F1C|1|B5|C|222
*
9F1C|1|B5|G|226
9F1C|1|B5|A|227
9F1C|1|B5|C|228
*
9F1C|1|B5|G|240
9F1C|1|B5|G|241
9F1C|1|B5|U|242
9F1C|1|B5|A|243
9F1C|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26

Chain DB

N-alpha-acetyltransferase 15, NatA auxiliary subunit