J4_9F1D_004

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9F1D|1|B5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|C|196
9F1D|1|B5|A|197
9F1D|1|B5|A|198
9F1D|1|B5|G|199
*
9F1D|1|B5|C|215
9F1D|1|B5|C|216
9F1D|1|B5|C|217
9F1D|1|B5|A|218
9F1D|1|B5|G|219
9F1D|1|B5|C|220
9F1D|1|B5|C|221
9F1D|1|B5|C|222
*
9F1D|1|B5|G|226
9F1D|1|B5|A|227
9F1D|1|B5|C|228
*
9F1D|1|B5|G|240
9F1D|1|B5|G|241
9F1D|1|B5|U|242
9F1D|1|B5|A|243
9F1D|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26

Chain DB

N-alpha-acetyltransferase 15, NatA auxiliary subunit