J4_9F1D_005

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCG*CGAGGGAG*UGUCGCCG*CACGGGG

Length

26 nucleotides

Bulged bases

9F1D|1|B5|G|859, 9F1D|1|B5|U|873, 9F1D|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|C|706
9F1D|1|B5|C|707
9F1D|1|B5|G|708
*
9F1D|1|B5|C|854
9F1D|1|B5|G|855
9F1D|1|B5|A|856
9F1D|1|B5|G|857
9F1D|1|B5|G|858
9F1D|1|B5|G|859
9F1D|1|B5|A|860
9F1D|1|B5|G|861
*
9F1D|1|B5|U|871
9F1D|1|B5|G|872
9F1D|1|B5|U|873
9F1D|1|B5|C|874
9F1D|1|B5|G|875
9F1D|1|B5|C|876
9F1D|1|B5|C|877
9F1D|1|B5|G|878
*
9F1D|1|B5|C|1222
9F1D|1|B5|A|1223
9F1D|1|B5|C|1224
9F1D|1|B5|G|1225
9F1D|1|B5|G|1226
9F1D|1|B5|G|1227
9F1D|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a